PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G46440.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18323.4 Da    PI: 10.2755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G46440.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.3e-261160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  OGLUM01G46440.3 11 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                     8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MARRGRVQLR RIEDKASRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
SSIEGTYDRY QQFSGARRDL NEGSTSINSD ENASIHSRLR DITAWSLQNN ADESDANQLE  120
KLEKLLTNAL RDTKSKKMLA KQNGEGSRSR ANSSGSRGQE EGSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-30MIKC_MADS family protein