PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 847aa MW: 96106.2 Da PI: 7.1336

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.8	1.2e-54	12	130	1	118
CG-1 1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+t OGLUM01G46490.1 12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNST 105 567889************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ ++++iv+vhy++v+ OGLUM01G46490.1 106 FQRRIYWMLDPAYDHIVFVHYRDVQ 130 ********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence
MQQQQGFGTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR 60 YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH 120 IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE 180 EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT 240 VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL 300 HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVPAEIV 360 QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE 420 LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL 480 NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL 540 NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS 600 AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRLVG RISDTSAHAQ SGSDDQLALK 660 ESLGAMRYAV QAAGRIQTAF RRNNKQVFRI EKNFRCWKKR KEFLKIRKNV IKIQARVRAH 720 QQHNKYKELL RSVGILEKVM LRWYRKGVGL RGFHPGAIAM PIDEEDEDDI AKVFRKQRVE 780 TALNEAVSRV SSIIDSPVAR QQYRRMLEMH KQNKDDDEKV EVSPASHVYG SGSHHMCWLS 840 HNNKAMH

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence

MQQQQGFGTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR  60
YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH  120
IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE  180
EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT  240
VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL  300
HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVPAEIV  360
QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE  420
LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL  480
NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL  540
NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS  600
AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRLVG RISDTSAHAQ SGSDDQLALK  660
ESLGAMRYAV QAAGRIQTAF RRNNKQVFRI EKNFRCWKKR KEFLKIRKNV IKIQARVRAH  720
QQHNKYKELL RSVGILEKVM LRWYRKGVGL RGFHPGAIAM PIDEEDEDDI AKVFRKQRVE  780
TALNEAVSRV SSIIDSPVAR QQYRRMLEMH KQNKDDDEKV EVSPASHVYG SGSHHMCWLS  840
HNNKAMH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	698	727	KKRKEFLKIRKNVIKIQARVRAHQQHNKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	1e-104	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46490.1