PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 228aa MW: 24504.7 Da PI: 9.0865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.2e-33	21	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdkev 92 lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp +++ e yfF+ +++ +g +ra g W+a+gk+k v OGLUM01G46690.1 21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKLV 110 699*************************.99***********...346778999998887776258888886443899******** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ vg k+tLvf+ ++ g +tdW mheyrl OGLUM01G46690.1 111 VAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 145 99888999*******...567889******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAR 60 LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGKRPV 120 GAKRTLVFFR RGGARTDWAM HEYRLLPADD HPPEANDVWV VCRVFKKTTT LAHRRSPPSI 180 RGAPRRRAAA ADDDDMPSSP SSCVTDGGDA GEEGEESSSC SVVASNCP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-32	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46690.1