PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G47420.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 467aa MW: 49086 Da PI: 8.0165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G47420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H OGLUM01G47420.1 81 FVCEICGKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	10.7	0.0016	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC Cgk++ +s+ k H +++ OGLUM01G47420.1 164 WKCDRCGKRYAVHSDWKAHSKVC 186 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MEEFELQQQP YYSKLLLGSP LEIANVDDSD LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT 60 PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRGGAGGGGG 120 GEPPRKRVYV CPEASCVHHS PSRALGDLTG IKKHFCRKHG EKKWKCDRCG KRYAVHSDWK 180 AHSKVCGTRE YKRDSFVTHR AFCDALAQEN NKLAQPMNMA AVTSALQGQQ QAHHPVADDD 240 DAAGVKSPHL KMFPDVDNIV AAATAGNPLL PPPLSMAGCM LSSLAAPLSS PFLPGCKLGV 300 DAARDAAMVF PPAPAPAGSA AAIMSATALL QKAAELGATT STGCYGGVAF PAMGIAGGLD 360 RLPAIGHHLA PYDDVVVPAA LQGQTATQLV GFDLGGLLPG QLYGGGGGAM TRAIGSLMHG 420 GDQHAGVVDR RRGEGVRVVD YMGVDDDDDH GCFDGVGPFG PHIGPWA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MEEFELQQQP YYSKLLLGSP LEIANVDDSD LQLVAGVPSD PPPAPPTAVK KKKKRSLPGT  60
PDPSAEVVAL SPRTLLATNR FVCEICGKGF QRDQNLQLHR RGHNLPWKLR QRGGAGGGGG  120
GEPPRKRVYV CPEASCVHHS PSRALGDLTG IKKHFCRKHG EKKWKCDRCG KRYAVHSDWK  180
AHSKVCGTRE YKRDSFVTHR AFCDALAQEN NKLAQPMNMA AVTSALQGQQ QAHHPVADDD  240
DAAGVKSPHL KMFPDVDNIV AAATAGNPLL PPPLSMAGCM LSSLAAPLSS PFLPGCKLGV  300
DAARDAAMVF PPAPAPAGSA AAIMSATALL QKAAELGATT STGCYGGVAF PAMGIAGGLD  360
RLPAIGHHLA PYDDVVVPAA LQGQTATQLV GFDLGGLLPG QLYGGGGGAM TRAIGSLMHG  420
GDQHAGVVDR RRGEGVRVVD YMGVDDDDDH GCFDGVGPFG PHIGPWA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-90	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G47420.1