PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G49620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 172aa    MW: 19663.5 Da    PI: 7.5485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G49620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86e-1165154694
                      ..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   6 tpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ++   ++++ +++  +f e++     g++   +  ++ +  + +s++++l+ r k++r +lt+GW++  +a+  +egD++ F++++ ++  lv+
  OGLUM01G49620.1  65 VKRTLMTNAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCPFHFKEVDD-VLVL 154
                      55667788899999999999998765433..33344445567799999993.4444459************************876433.2444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CWYGNDVTLT KSMHLQIAHV AAVNLPKIPL  60
FVCTVKRTLM TNAKMTFAVQ FSERYINKYI GSPIDDLMVS MAGTTQSYQM RLKRSKDSRA  120
MLTTGWNQLI DAKAFDEGDV CPFHFKEVDD VLVLKITQLR HFFGMHYNYP KY