PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G49640.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 233aa MW: 23994 Da PI: 10.7618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G49640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.5	1.4e-39	28	138	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + OGLUM01G49640.1 28 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlllp 120 789*************************************************************99999888755555555444444.358888 PP TCP 89 ...............kaaksaa 95 + ++ OGLUM01G49640.1 121 raapfilgkrlraadD----HT 138 7777777766533322....22 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MTTRPDGGGG APDKQLVPAS NANGTALAVR KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSPSSLRSNS TSNSNDLLLP 120 RAAPFILGKR LRAADDHTTS PAPAPDATAP TQAFWALPAR ADFGQLWSFA AAPEMMVAAA 180 AAPAMPGEAS AARVGNYLPM AQGNLNLLAS FSGGPGGAGA TAATGRPEEE SAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-44	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G49640.1