PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G50190.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 142aa    MW: 15500.7 Da    PI: 9.8806
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G50190.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-192458135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  OGLUM01G50190.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MDMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDSAASAT ATDGAEQQKK TKAKKEKAQE EEVTMELHTV GFRSKDAAVL KQRRRMRRRK  120
CLGEEERAAI LLMALSSGVI YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
25484RKRRRAALGLDSAASATATDGAEQQKKTKAK
35487RKRRRAALGLDSAASATATDGAEQQKKTKAKKEK
45585RKRRRAALGLDSAASATATDGAEQQKKTKAK
55588RKRRRAALGLDSAASATATDGAEQQKKTKAKKEK
6112118QRRRMRR
7113119RRRMRRR
8113120RRRMRRRK
9114120RRRMRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-22GATA family protein