PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G01050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 419aa MW: 47883.1 Da PI: 8.5556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G01050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.2e-06	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg sF + +Lk+H+++H OGLUM02G01050.1 110 HTCQECGASFQKPAHLKQHMQSH 132 79*******************99 PP
2	zf-C2H2	21.8	5e-07	138	162	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ +H OGLUM02G01050.1 138 FICPleDCPFSYIRKDHLNRHMLKH 162 78*********************99 PP
3	zf-C2H2	15.4	5.4e-05	167	192	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg+ Fs k n++rH + H OGLUM02G01050.1 167 FTCSmdGCGRKFSIKANMQRHVKEiH 192 89********************9988 PP
4	zf-C2H2	15.6	4.6e-05	204	228	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+ s +k+H +H OGLUM02G01050.1 204 FVCKeeGCNKVFKYASKMKKHEESH 228 89*******************9988 PP
5	zf-C2H2	17.7	1e-05	295	319	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++Hi+ H OGLUM02G01050.1 295 KCSfeGCECSFSNKSNLTKHIKAsH 319 688899***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MKARRNQEPQ SSLPAAAAAA PSSSRRSAGN HTSSQPRSPP MCSGDDIDGD TRVEATQHRD 60 IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN GEKVVHEGDH TCQECGASFQ 120 KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML KHQGKLFTCS MDGCGRKFSI 180 KANMQRHVKE IHEDENATKS NRQFVCKEEG CNKVFKYASK MKKHEESHVK LDYVEVVCCE 240 PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR HLRAHEEVPS TERIKCSFEG 300 CECSFSNKSN LTKHIKASHD QVKPFACRFT GCEKVFPYKH VRDNHEKSSA HVYTQANFTE 360 MDEQLLSCPR GGRKRKAVTV ETLTRKRVTM HGDASSLDNG TEYLRWLLSG GDDDSSQTH

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MKARRNQEPQ SSLPAAAAAA PSSSRRSAGN HTSSQPRSPP MCSGDDIDGD TRVEATQHRD  60
IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN GEKVVHEGDH TCQECGASFQ  120
KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML KHQGKLFTCS MDGCGRKFSI  180
KANMQRHVKE IHEDENATKS NRQFVCKEEG CNKVFKYASK MKKHEESHVK LDYVEVVCCE  240
PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR HLRAHEEVPS TERIKCSFEG  300
CECSFSNKSN LTKHIKASHD QVKPFACRFT GCEKVFPYKH VRDNHEKSSA HVYTQANFTE  360
MDEQLLSCPR GGRKRKAVTV ETLTRKRVTM HGDASSLDNG TEYLRWLLSG GDDDSSQTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-123	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G01050.1