PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G01050.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 866aa MW: 97802 Da PI: 7.6195

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G01050.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	557	579	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg sF + +Lk+H+++H OGLUM02G01050.2 557 HTCQECGASFQKPAHLKQHMQSH 579 79*******************99 PP
2	zf-C2H2	20.6	1.2e-06	585	609	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ +H OGLUM02G01050.2 585 FICPleDCPFSYIRKDHLNRHMLKH 609 78*********************99 PP
3	zf-C2H2	14.2	0.00013	614	639	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg+ Fs k n++rH + H OGLUM02G01050.2 614 FTCSmdGCGRKFSIKANMQRHVKEiH 639 89********************9988 PP
4	zf-C2H2	14.4	0.00011	651	675	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+ s +k+H +H OGLUM02G01050.2 651 FVCKeeGCNKVFKYASKMKKHEESH 675 89*******************9988 PP
5	zf-C2H2	16.5	2.4e-05	742	766	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++Hi+ H OGLUM02G01050.2 742 KCSfeGCECSFSNKSNLTKHIKAsH 766 688889***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence
MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFLSYAEFG RPADVGRLFD 60 EIPHPDIISF TSLMSLHLKL DHHRKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI 120 GSAVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK 180 CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPTHITIVGV 240 LSACADIGAL DLGHAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA 300 FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK 360 MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR 420 LAEIAGKEII EREPGDDGVY VLLWNMYASS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD 480 GVVHEFLMCS GDDIDGDTRV EATQHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK 540 SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD 600 HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DENATKSNRQ FVCKEEGCNK 660 VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH 720 LKKNIKRHLR AHEEVPSTER IKCSFEGCEC SFSNKSNLTK HIKASHDQVK PFACRFTGCE 780 KVFPYKHVRD NHEKSSAHVY TQANFTEMDE QLLSCPRGGR KRKAVTVETL TRKRVTMHGD 840 ASSLDNGTEY LRWLLSGGDD DSSQTH

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence

MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFLSYAEFG RPADVGRLFD  60
EIPHPDIISF TSLMSLHLKL DHHRKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI  120
GSAVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK  180
CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPTHITIVGV  240
LSACADIGAL DLGHAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA  300
FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK  360
MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR  420
LAEIAGKEII EREPGDDGVY VLLWNMYASS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLMCS GDDIDGDTRV EATQHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK  540
SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD  600
HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DENATKSNRQ FVCKEEGCNK  660
VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH  720
LKKNIKRHLR AHEEVPSTER IKCSFEGCEC SFSNKSNLTK HIKASHDQVK PFACRFTGCE  780
KVFPYKHVRD NHEKSSAHVY TQANFTEMDE QLLSCPRGGR KRKAVTVETL TRKRVTMHGD  840
ASSLDNGTEY LRWLLSGGDD DSSQTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-117	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G01050.2