PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G01420.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 557aa MW: 58561.6 Da PI: 4.4043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G01420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.7e-12	294	337	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq OGLUM02G01420.1 294 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 337 89*******************7.....7*************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG 60 FCCSSELEAQ VSALLDLPSS IPLDSSSLGM HAQALLSNQS IWQSSSEEEE EADGGGGAKT 120 RLLVPVAGGL VELFASRYMA EEQQMAELVM AQCGGGGGGA GDDGGGQAWP PPETPSFQWD 180 GGADAQRLMY GGSSLNLFDA AAADDDPFLG GGGGGGGDAV GDAAAAAGAW PYAGMAVSEP 240 SVAVAQEQMQ HAAGGGVAES GSEGRELHGG DPEDDGDGEG RSGGAKRQQC KNLEAERKRR 300 KKLNGHLYKL RSLVPNITKM DRASILGDAI DYIVGLQKQV KELQDELEDN HVHHKPPDVL 360 IDHPPPASLV GLDNDDASPP NSHQQQPPLA VAGSSSRRSN KDPAMTDDKV GGGGGGGHRM 420 EPQLEVRQVQ GNELFVQVLW EHKPGGFVRL MDAMNALGLE VINVNVTTYK TLVLNVFRVM 480 VRDNEVAVQA DRVRDSLLEV TRETYPGVWP SPQEEDDAKF DGGDGGQAAA AAAAGGEHYH 540 DEVGGGYHQH LHYLAFD

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG  60
FCCSSELEAQ VSALLDLPSS IPLDSSSLGM HAQALLSNQS IWQSSSEEEE EADGGGGAKT  120
RLLVPVAGGL VELFASRYMA EEQQMAELVM AQCGGGGGGA GDDGGGQAWP PPETPSFQWD  180
GGADAQRLMY GGSSLNLFDA AAADDDPFLG GGGGGGGDAV GDAAAAAGAW PYAGMAVSEP  240
SVAVAQEQMQ HAAGGGVAES GSEGRELHGG DPEDDGDGEG RSGGAKRQQC KNLEAERKRR  300
KKLNGHLYKL RSLVPNITKM DRASILGDAI DYIVGLQKQV KELQDELEDN HVHHKPPDVL  360
IDHPPPASLV GLDNDDASPP NSHQQQPPLA VAGSSSRRSN KDPAMTDDKV GGGGGGGHRM  420
EPQLEVRQVQ GNELFVQVLW EHKPGGFVRL MDAMNALGLE VINVNVTTYK TLVLNVFRVM  480
VRDNEVAVQA DRVRDSLLEV TRETYPGVWP SPQEEDDAKF DGGDGGQAAA AAAAGGEHYH  540
DEVGGGYHQH LHYLAFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	303	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G01420.1