PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G03280.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1077aa MW: 119585 Da PI: 6.6625

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G03280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.9	5.9e-21	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ ++ OGLUM02G03280.1 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 238 99***************************954.4444.49********************************************99..55 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OGLUM02G03280.1 239 EKHQLLLGIRRA 250 788889999997 PP
2	Auxin_resp	117.7	9.8e-39	275	358	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ OGLUM02G03280.1 275 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence
MASMKQQQTP ASSAVTAAAA AASSSATAAV AACEGERKAA AINSELWHAC AGPLVSLPPV 60 GSLVVYFPQG HSEQVAASMQ KDVDAHVPSY PNLPSKLICL LHGVNLHADP DTDEVYAQMT 120 LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF 180 SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK 240 HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI 300 PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG 360 WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE 420 EVCIKDTQNQ NSTAPGLSLV QWMNMNRQQS SSLANTAAQS EYLQALGNPA VQNLAADELA 480 RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR 540 QQNSIQVIPL SQAQSNLVQA QVIIQNQMQQ QKPSPTQNPQ RINGQRLLLS HQQQDQNLQL 600 QQQLLLQQKQ QLQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL 660 MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ 720 EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PTTGGAMIIS GATQSVVTEE MPSCSTSPST 780 ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVIAT PLMTKELPKP NNNVKQSVVN 840 SKLPNVAPGP QNCINNALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL 900 PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD 960 ALQEISTSMV SQSFGQSDMA FNSIDSTIND GAFLNKNSWP TAPLLQRMRT FTKVYKRGAV 1020 GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWE

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence

MASMKQQQTP ASSAVTAAAA AASSSATAAV AACEGERKAA AINSELWHAC AGPLVSLPPV  60
GSLVVYFPQG HSEQVAASMQ KDVDAHVPSY PNLPSKLICL LHGVNLHADP DTDEVYAQMT  120
LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  180
SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK  240
HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI  300
PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG  360
WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE  420
EVCIKDTQNQ NSTAPGLSLV QWMNMNRQQS SSLANTAAQS EYLQALGNPA VQNLAADELA  480
RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR  540
QQNSIQVIPL SQAQSNLVQA QVIIQNQMQQ QKPSPTQNPQ RINGQRLLLS HQQQDQNLQL  600
QQQLLLQQKQ QLQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL  660
MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ  720
EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PTTGGAMIIS GATQSVVTEE MPSCSTSPST  780
ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVIAT PLMTKELPKP NNNVKQSVVN  840
SKLPNVAPGP QNCINNALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL  900
PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD  960
ALQEISTSMV SQSFGQSDMA FNSIDSTIND GAFLNKNSWP TAPLLQRMRT FTKVYKRGAV  1020
GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G03280.1