PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G03560.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 248aa    MW: 26392.8 Da    PI: 8.9373
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G03560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.94.9e-17156193136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  OGLUM02G03560.1 156 CHHCGISAvsTPMMRRGPDGPRTLCNACGLMWANKGTM 193
                      *****99999*************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES VSAERVQAVL LLLGGRELAP  60
GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF  120
TSSKSKAEEA TSAITSSEGS PNWGAVEGRP PSAAECHHCG ISAVSTPMMR RGPDGPRTLC  180
NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE ATGVEQHNSA VEEAVSAANG  240
HESQSGVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-65GATA family protein