PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G03650.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 26663.9 Da PI: 9.5513

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G03650.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	116	170	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Le+ F+ ++ +s++e++eLA klgL+ rqV vWFqNrRa+ k OGLUM02G03650.1 116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTK 170 788899***********************************************98 PP
2	HD-ZIP_I/II	114.6	5.9e-37	116	204	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++d+l+++n+rL+++ +eLr+ OGLUM02G03650.1 116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRR 204 69*************************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSSSSLTTTS SMDSVVDGGL DTRLSLAVGC CPPRRRPVLL FGEVLPSPEK KVAAAAVVAA 60 GKRGREQRGE AEAEATTTRQ RRSCKKGRRG RGDDDDDDGD RRSPSGGGGD EEGASRKKLR 120 LTGEQATLLE DSFRAHNILS HAEKQELAGK LGLSARQVEV WFQNRRARTK LKQTEADCDL 180 LRRWCDHLAA DNARLRRDLA ELRRSSSSPP VSGLAVATPV VCPSCAHDDK RRLAFATAAA 240 AAGDMASN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	121	SRKKLRL
2	165	173	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	5e-27	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G03650.1