PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G05240.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 206aa MW: 22681.7 Da PI: 7.0536

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G05240.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s OGLUM02G05240.2 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP
2	K-box	17.9	1.3e-07	62	117	46	100
K-box 46 LslkeLqqLeqqLeks.lkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +sl+eL + q + + ++i +++ll +q+++l++ke+ l+++n L ++++e OGLUM02G05240.2 62 CSLRELIEHYQTVTNThFEEINHDQHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 117 78888877777776553799******************************998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TCSLRELIEH YQTVTNTHFE EINHDQHQLL NQQLDNLRRK EHILEDQNSF LCRMINENHH 120 QAAVGGGDVK AMVEMAPVLS MLTAAPAYYG EESSSTALQL TPPLHAVDAA AAAGFRLQPT 180 QPNLQDPGCS SSSFHAAAAG HGLQLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-32	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G05240.2