PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G05270.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 259aa    MW: 28789.3 Da    PI: 4.6278
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G05270.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.3e-56831871102
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+df
  OGLUM02G05270.1  83 QLREFWANQmeeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDF 176
                      89******9777789******************************************************************************* PP

            NF-YC  92 lvdivprdelk 102
                      lvdivprde+k
  OGLUM02G05270.1 177 LVDIVPRDEMK 187
                      ********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPSSQPQPV MGVATGGSQA YPPPAAAYPP QAMVPGAPAV VPPGSQPSAP FPTNPAQLSA  60
QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAN QMEEIEQTTD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR TDIYDFLVDI  180
VPRDEMKEEG LGLPRVGLPP NVGGAADTYP YYYVPAQQGP GSGMMYGGQQ GHPVTYVWQQ  240
PQEQQEEAPE EQHSLPESS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.13e-74NF-YC family protein