PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G06200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARR-B

Protein Properties

Length: 626aa MW: 68411.1 Da PI: 6.5138

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G06200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.3	7.3e-28	213	266	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+ +t+e+v+SHLQkYRl OGLUM02G06200.1 213 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDLMNVENITRENVASHLQKYRL 266 79*****************.******************************8 PP
2	Myb_DNA-binding	36	1.6e-11	215	265	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ ++ t++++ s++qky+ OGLUM02G06200.1 215 RVVWSVELHRKFVAAVNQLGIEkaVPKKILDLMNvENITRENVASHLQKYR 265 678***********************************************7 PP
3	Response_reg	78.9	1.8e-26	31	139	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +++l+++l + +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + + OGLUM02G06200.1 31 VLAVDDDPTCLKILENLLLRCQY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITH 122 799******************.***********888889***************87754.558***************** PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ e+l++ OGLUM02G06200.1 123 GACDYLLKPVRLEQLRT 139 ************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MTVEERQGRV GGHGVSGGGG GRDQFPVGMR VLAVDDDPTC LKILENLLLR CQYHVTTTGQ 60 AATALKLLRE NKDQFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GETQTVMKGI 120 THGACDYLLK PVRLEQLRTI WQHVIRRKNC DAKNRGNDDD AGQKAQGMNN EGESIGANRN 180 KRQSRKSRDE NGDDGDDSDE NSNENGDSST QKKPRVVWSV ELHRKFVAAV NQLGIEKAVP 240 KKILDLMNVE NITRENVASH LQKYRLYLKR LSTDASRQAN LAAAFGGRNP AYINMNSFGN 300 YNAYGRYRTV PTAGHTQANN ILTRMNSPSA FGVHGLLHSQ PIQLGHAQNN LSTSLNDLGG 360 LNNGNMIRGA QMSTILTGPS GNSFPNISNG APLATANRSL QPLESSNQQH LSRVHSSSAD 420 PFSTLVGESP QFPDLGRTTN TWQTAVPSNI QDRGHNDNMS QATLHMNGPK IEPVSSFTSS 480 NQIPLLGNEM QGQVASLASN VPIAFNQDTS PFNYGSSTNS RDMLNNSHVF INSSINTSLP 540 NLSLDNPAVP RQTLDRGNTG IVSPMQDGRI HHQAVSNQLN YNDDLMRTSG LQRGLSGGLD 600 DIVVDMFRPD REDDGVPYID GDWELV

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MTVEERQGRV GGHGVSGGGG GRDQFPVGMR VLAVDDDPTC LKILENLLLR CQYHVTTTGQ  60
AATALKLLRE NKDQFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GETQTVMKGI  120
THGACDYLLK PVRLEQLRTI WQHVIRRKNC DAKNRGNDDD AGQKAQGMNN EGESIGANRN  180
KRQSRKSRDE NGDDGDDSDE NSNENGDSST QKKPRVVWSV ELHRKFVAAV NQLGIEKAVP  240
KKILDLMNVE NITRENVASH LQKYRLYLKR LSTDASRQAN LAAAFGGRNP AYINMNSFGN  300
YNAYGRYRTV PTAGHTQANN ILTRMNSPSA FGVHGLLHSQ PIQLGHAQNN LSTSLNDLGG  360
LNNGNMIRGA QMSTILTGPS GNSFPNISNG APLATANRSL QPLESSNQQH LSRVHSSSAD  420
PFSTLVGESP QFPDLGRTTN TWQTAVPSNI QDRGHNDNMS QATLHMNGPK IEPVSSFTSS  480
NQIPLLGNEM QGQVASLASN VPIAFNQDTS PFNYGSSTNS RDMLNNSHVF INSSINTSLP  540
NLSLDNPAVP RQTLDRGNTG IVSPMQDGRI HHQAVSNQLN YNDDLMRTSG LQRGLSGGLD  600
DIVVDMFRPD REDDGVPYID GDWELV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-112	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G06200.1