PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G06210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 194aa MW: 20470.7 Da PI: 5.5997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G06210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H OGLUM02G06210.1 84 FACHYCRREFYSSQALGGHQNAH 106 78******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MEGMSKLAGG GGDVTFVGGG RRMAAAAAAA LRLVELDLIG TVGAAVPGQA TAPRLLVVSP 60 APAKEEDEEE ERDGDDDGEP RQLFACHYCR REFYSSQALG GHQNAHKRER TLARRGAGGE 120 QASSSSFAIH HGAFVSASPG WMARVLHGEA PPAISVAGDG GGGERWWWGG GNVGYYWPRD 180 GDDQTRQLDL TLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G06210.1