PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G07170.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 300aa MW: 31141.4 Da PI: 10.1391

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G07170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.3e-08	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ OGLUM02G07170.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126 8***********************96 PP
2	zf-CCCH	34.8	2.8e-11	266	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ OGLUM02G07170.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEGGGRKRSK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF 60 PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC 120 HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS 180 LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS 240 IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	7e-49	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G07170.1