PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 289aa    MW: 31865.7 Da    PI: 9.5996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.4e-1721112998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +++  l lp +fa+e +g+++e ++ +l           r W+vk+     +g+ +l++GW +F++a+gL++gD +vF++dg   f  +v+v
  OGLUM02G07480.1  21 PGSSRTKLKLPDEFARELEGEERELRDAKLLVAGVgrrrrgRMWDVKV--VADDGGAYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TVTV 110
                      44556669**********88888777777654222334444*******..999999**************************998888..8888 PP

                      E- CS
               B3  97 fr 98 
                      f+
  OGLUM02G07480.1 111 FD 112
                      87 PP
2B350.92.8e-161872571786
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       +p +f e+hg+  +e  +++    +grsW+v+l++    r +++r vl+ GW +F+ +ngL +gD++ F+  +
  OGLUM02G07480.1 187 NVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 257
                      57999*****998665..455.45599*******998887777788************************9554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MEEQMSNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEG EERELRDAKL LVAGVGRRRR  60
GRMWDVKVVA DDGGAYLGRG WLRFARAHGL RDGDLLVFRY DGAAAFTVTV FDDGTMCRRA  120
YHDAAGSGSS SDYDGNDGRG EAAATSQFVV TLRQGNLGKK QAQYLLTNQP TGRRSPAAMA  180
AAAAEQNVPV EFQEAHGYAA REKVVLRMRG RSWTVRLKHT KGRRPRRERA VLRYGWHRFC  240
ADNGLAVGDT CFFRALRSAG SGAGDVDDGD GDHVLSVTVH KADGGDPLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229RPRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-13B3 family protein