PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G08720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 254aa    MW: 28223.6 Da    PI: 5.0711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G08720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.6e-36121441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +ppGfrF+Ptde+lv +yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+++++++    +++r+t sg+Wk tg++k+++
  OGLUM02G08720.1  12 MPPGFRFQPTDEQLVIDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTTAAREA----QARRTTPSGFWKPTGTKKTIF 100
                      79*************************988.55***************778888999*******99875....7899****************9 PP

              NAM  94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                           ++  + +k+ ++fy      +g++++ +kt+W+mhey+l
  OGLUM02G08720.1 101 IVaggHEVPTAVKRRFIFYlghhqpSGSSSNNNKTSWIMHEYHL 144
                      9876666669*********88887778899999*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MAMTPQLAFS RMPPGFRFQP TDEQLVIDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTTAAREAQ ARRTTPSGFW KPTGTKKTIF IVAGGHEVPT AVKRRFIFYL  120
GHHQPSGSSS NNNKTSWIMH EYHLMNPPRA AAVPSSSSVN PLPTDDLTEE MVLCRISNKD  180
LPKPPYIHNG LLQFSSVGLN GDGYNYLILD HLEPPAMEYP NVGIGNVDDA AAGTDDPGDL  240
DEEIDDSMQR NHGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-30NAC family protein