PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G09240.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 619aa MW: 64159 Da PI: 8.0922

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G09240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	427	470	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ eY++ OGLUM02G09240.1 427 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 470 8899******************95.....599**********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MDTIFVLGQE SLQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL 60 YCVDGWLSGG EDGGGGVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGAFM ELSELELVAS 120 ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED 180 FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA 240 QVATTTTTTT TPSSSSRLHP RPPAPHHVHV SPFSRHGGVG GSGVLHFPSA EADDAAMAQA 300 MLDVISSPST SSSAAALHAP WSSVKHRAQI IRSPRRGTPT TTAFRAYNAA LAPRAAASRR 360 PPGEPGQRMI KMGFSILRRM HMVRCSQERA AAATAAASAA AAQRSGGDDD EDATAAPPPP 420 TSSQLHHMIS ERRRRERLNE SFEHLRGLLP PGSKKDKATV LAKTLEYMNL LIAQISELEA 480 KNRALQTQIH QRANGSSSSR SSMIRTVNEV HHHHHHQWLA VAAAAGGSPE RVQVHVIGGG 540 DHDGGASASS SSSSAPEVTV RVAVRAPERG GADVSELVLR VLALLKAMGG FTVVAVDARQ 600 PGGGGGNGTS VDSCAYLTY

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MDTIFVLGQE SLQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL  60
YCVDGWLSGG EDGGGGVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGAFM ELSELELVAS  120
ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED  180
FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA  240
QVATTTTTTT TPSSSSRLHP RPPAPHHVHV SPFSRHGGVG GSGVLHFPSA EADDAAMAQA  300
MLDVISSPST SSSAAALHAP WSSVKHRAQI IRSPRRGTPT TTAFRAYNAA LAPRAAASRR  360
PPGEPGQRMI KMGFSILRRM HMVRCSQERA AAATAAASAA AAQRSGGDDD EDATAAPPPP  420
TSSQLHHMIS ERRRRERLNE SFEHLRGLLP PGSKKDKATV LAKTLEYMNL LIAQISELEA  480
KNRALQTQIH QRANGSSSSR SSMIRTVNEV HHHHHHQWLA VAAAAGGSPE RVQVHVIGGG  540
DHDGGASASS SSSSAPEVTV RVAVRAPERG GADVSELVLR VLALLKAMGG FTVVAVDARQ  600
PGGGGGNGTS VDSCAYLTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	436	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-12	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G09240.1