PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G09790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 183aa MW: 18749.9 Da PI: 9.8167

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G09790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	20	66	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er RR+++N+ ++ L +l a + + + L A eYI++ q OGLUM02G09790.1 20 KTTERIRREQMNKLYSHLDSLGGAA---AAAAATRPDRLGVAAEYIRQTQ 66 568*****************99998...7888888888999999999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL GGAAAAAAAT RPDRLGVAAE 60 YIRQTQERVD MLREKKRELT GGGGGGSSSS SGAGAATAAA PEVEVQHLGS GLHAILVTGA 120 PPTDGASFHR AVRAVEDAGG QVQNAHFSVA GAKAVYTIHA MIGDGYGGIE RVVQRLKEAI 180 RSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-16	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G09790.1