PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G09850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 300aa    MW: 32107.7 Da    PI: 6.3154
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G09850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33151062102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  OGLUM02G09850.1  15 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLR 99 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r++s
  OGLUM02G09850.1 100 RIVRRSS 106
                      ****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MTTTTAEGGG GVAPFVAKTY RMVDDPATDG VIAWGRDSNS FVVADPFAFS QTLLPAHFKH  60
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR IVRRSSGGGG AKRKEEAGGC  120
GGGGEAAAGD VDEESAVVAM EVARLRREQR EIEGRVAAMW RRVQETERRP KQMLAFLVKV  180
VGDPQVLRRL VDRDNTNAAA AASNADDAAV HHQVKRPRLL LDSSSTTTTH GDRHLVTAAA  240
DGFYAGGCGP EAAAADAFVP DDAVDFTGLY TGGDGFGNAV VDAGVDYPPA YAFPVVDSGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-56HSF family protein