PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G12410.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 510aa    MW: 57469.3 Da    PI: 3.7957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G12410.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM483.9e-15111441127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ +
  OGLUM02G12410.1  11 LSPGFKFNPSDQMLVELFLLPYLIDGELPVCGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQRS 102
                      579*******************9999977755432443331156689****73444445558888887765..56889999788899**97765 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ev+++  +++  + k +L f+  ++++  +t Wvmhey 
  OGLUM02G12410.1 103 egKGEVVVApgGEAFLWEKFSLNFHCDDRRS-GSTGWVMHEYI 144
                      223344444455566999*******666655.59********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MAAAAARSQG LSPGFKFNPS DQMLVELFLL PYLIDGELPV CGLVFVEDDH LGGLPLPPWI  60
LLDRHGRGDE DEAYFVAPMG AGDGARQVRS VAGGGKWVKQ RSEGKGEVVV APGGEAFLWE  120
KFSLNFHCDD RRSGSTGWVM HEYIVSPPAG SAVAASHRAT HITFTGHGQN RKRVPDGYVL  180
VLDDAAAAPP SESEQSNQEE QEYAPPPESE QSNQEEQEYA ACTDQIQQQC FVPEQQMSNQ  240
DYFPAAAAAE QSNQQFFVPA EEQRSHQLFL PAEEQSSQQF FMPAEEQSSH QFLPAEEQSS  300
HQFLPAEEQS NYQQFLPALE QMTQSNQEFA YGEQSQCYIV PEQQQLSNQE YAYSEQSQCY  360
ILPEQQQLSD QEYAYSEQSQ CYILPEQQEL SNQEAEYAFV CYDEQQQQSN QEAEYAFACY  420
DEQQQQQQYL HGDLTSWQEP LVTSSSSSSQ QFLGQEQLLP DGLLLDGFGE ISQQQGDQEY  480
AYCEESQCYI MPEQQQQSNQ EAEFAFACYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-08NAC family protein