PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G15720.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 267aa    MW: 29289.7 Da    PI: 8.2971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G15720.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1629125194
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k l+psd  ++  +l +p ++++++g        ++led++g             + W +++  +k+ g + ltkGW+ Fv+++gLk+gD++
  OGLUM02G15720.1  29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTI 112
                      89*******9988799********9997........888888888888888889999*******..**************************** PP

                      EEEE-SSSEE..EE CS
               B3  81 vFkldgrsefelvv 94 
                       F + g+ +++l++
  OGLUM02G15720.1 113 SFFR-GSACGRLFI 125
                      *984.336665555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE  60
DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC  120
GRLFICCRLG THATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPLL GQARLHDGNQ  180
DGGSAPSRHV PSSGQRVEAQ LSRVSSRRQG RTMKHSIPEP TIETPPILES MFLIAAPPAV  240
KCLRLFGVNI YVLPVSSSGQ PKQESSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-18B3 family protein