PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G17550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 473aa MW: 52569.4 Da PI: 5.3652

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G17550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.4	2.6e-34	22	113	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye+++d++++ ++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF++++F kg+k+ll OGLUM02G17550.1 22 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHLL 106 9******************66679************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k OGLUM02G17550.1 107 KNIHRRK 113 ***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR 60 LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH 120 PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT 180 KMIAFLQQAS KNPQFVNKLV KMAEASLIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS 240 TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNGSPHGKH PECDMMGREC 300 LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG 360 TTIDNPTEAA TATIEKDDTI DRCHNQKKSA DSRTADATTP RADARVASEA PAAPAAVVND 420 KFWEQFLTER PGCSETEEAS SGLRTDTSRE QMENRQAYDH SRNDREDVEQ LKL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR  60
LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH  120
PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT  180
KMIAFLQQAS KNPQFVNKLV KMAEASLIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS  240
TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNGSPHGKH PECDMMGREC  300
LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG  360
TTIDNPTEAA TATIEKDDTI DRCHNQKKSA DSRTADATTP RADARVASEA PAAPAAVVND  420
KFWEQFLTER PGCSETEEAS SGLRTDTSRE QMENRQAYDH SRNDREDVEQ LKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-107	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G17550.1