PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G18450.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 380aa MW: 40311.4 Da PI: 5.0109

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G18450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.2	2.6e-24	28	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 rWt+qe+l+Lie++r +e r + + + +p+W++v++++r++g+er+++qC+++w+nl+++ykkike+ OGLUM02G18450.1 28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEW 121 8************999988843224557778888999999999999999888************************************ PP trihelix 68 ekkrtsessstcpyfdqle 86 e+ ++ + + p f ++ OGLUM02G18450.1 122 ERAAAAAAPPREPSFWAMR 140 *9988888889998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSTAGHPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA 60 AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE 120 WERAAAAAAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV APSGGGNAAA 180 GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEEDDDEAPP 240 ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPTTQQ QQQQQQQQGG 300 QKRRRADDDD EEEDDGRRGG ELQSKLVEIL DRSSRMVAAQ LEAQNANSRL DREQRRDQAA 360 SLAVVLGRLA DALGRIADKL

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSTAGHPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA  60
AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE  120
WERAAAAAAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV APSGGGNAAA  180
GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEEDDDEAPP  240
ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPTTQQ QQQQQQQQGG  300
QKRRRADDDD EEEDDGRRGG ELQSKLVEIL DRSSRMVAAQ LEAQNANSRL DREQRRDQAA  360
SLAVVLGRLA DALGRIADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-44	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G18450.1