PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G19090.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 450aa MW: 49910.9 Da PI: 4.7453

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G19090.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.3	6.8e-35	68	160	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ ++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +++k+ll+ OGLUM02G19090.2 68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLLK 152 9**************************************************************999.........************* PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 ki r++s+ OGLUM02G19090.2 153 KIVRRRSS 160 **9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MDHNTDPPPT TMVDAAAALL LEPKLEGYDD GGGGEPLQPA PFVSPLDQLM QPPRPLEALL 60 QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV 120 RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE 180 LNTLRREKNA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL 240 RQLKVHRQQK EIDSTRVKRK FLKHVPHGNI ESENIGLDGI EAPDDIGALV QGFDTQEELE 300 LGSGVELLEI PPASGPRGQD PTIGRSKGKN VLSPGLDATS SEADCLGSFS DNMGMLSDSM 360 LQTAGKLMDA DDDERIWGVD ASSALQSSCS GTSQQAYGSL VSDPYLMEMA NKPEKFWELD 420 FQALDDGDLQ LDKCVIDDPA LQQQRGNMNS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MDHNTDPPPT TMVDAAAALL LEPKLEGYDD GGGGEPLQPA PFVSPLDQLM QPPRPLEALL  60
QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV  120
RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE  180
LNTLRREKNA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL  240
RQLKVHRQQK EIDSTRVKRK FLKHVPHGNI ESENIGLDGI EAPDDIGALV QGFDTQEELE  300
LGSGVELLEI PPASGPRGQD PTIGRSKGKN VLSPGLDATS SEADCLGSFS DNMGMLSDSM  360
LQTAGKLMDA DDDERIWGVD ASSALQSSCS GTSQQAYGSL VSDPYLMEMA NKPEKFWELD  420
FQALDDGDLQ LDKCVIDDPA LQQQRGNMNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	1e-70	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G19090.2