PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G19990.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 414aa MW: 46952.1 Da PI: 6.7343

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G19990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.3	5.7e-20	100	198	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 +W +v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++ OGLUM02G19990.1 100 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarskhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHPE 193 799**********8888887542334466778888899*****************************************95488887777 PP trihelix 81 yfdql 85 +++ + OGLUM02G19990.1 194 LLEGM 198 76655 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MEGNLPPRGA LVHGHGHGHG GGVGAFDLEA TMQPPPPFHF AQDPHLHHHQ GMVPVRGNPM 60 LDLGNVVKTS PSDEEDVDDG HHHGGGGGSG KEASQWHRVK WISGMVKLLV SAVAYIDEDV 120 DMDYGTGSAA RSKHAMLKRK GKWRLVSAAM TERGFPVSPQ QCEDKFNDLN KRYKRMTEIL 180 GRGTACQVVE HPELLEGMRL SGKLKEEARK HLNSKHLHYE EMCSYHNRNK MCLLDDPALQ 240 KSLRLALRSG EEHAKKNPFG YDDEDFSDDD DEDEEFDDLE VSAEDHHHGI HGAKRLKHDQ 300 EETHFGSNLS EVAVIDMNKM LSEGSGGPTA EKSPSTPGMR DIRLEKRRLK IKAQMLKIEQ 360 KHFKWLRFSK EKDRELEKMR LENEKMKLEN ERLELELKLK EIEMGIKPKK IFSD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MEGNLPPRGA LVHGHGHGHG GGVGAFDLEA TMQPPPPFHF AQDPHLHHHQ GMVPVRGNPM  60
LDLGNVVKTS PSDEEDVDDG HHHGGGGGSG KEASQWHRVK WISGMVKLLV SAVAYIDEDV  120
DMDYGTGSAA RSKHAMLKRK GKWRLVSAAM TERGFPVSPQ QCEDKFNDLN KRYKRMTEIL  180
GRGTACQVVE HPELLEGMRL SGKLKEEARK HLNSKHLHYE EMCSYHNRNK MCLLDDPALQ  240
KSLRLALRSG EEHAKKNPFG YDDEDFSDDD DEDEEFDDLE VSAEDHHHGI HGAKRLKHDQ  300
EETHFGSNLS EVAVIDMNKM LSEGSGGPTA EKSPSTPGMR DIRLEKRRLK IKAQMLKIEQ  360
KHFKWLRFSK EKDRELEKMR LENEKMKLEN ERLELELKLK EIEMGIKPKK IFSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-63	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G19990.1