PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20220.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 24604.1 Da    PI: 5.8893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13151195755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rEr RR+r+N+ f+ +r+l+P++     +K s +ei   A+ YIk+Lq
  OGLUM02G20220.1 151 VRERERRRRMNDMFAGIRRLVPNL----PEKSSRVEIIDGAIAYIKMLQ 195
                      59*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MTVRAPLRRT GVLAMASAAL KRYNITAVTS LSMFMFMFYT IPLSCSLLRC TFACFATMSQ  60
EEQRHGRQLP LATSGVITFN GVPLSPLTAG AESDGDDDDV VIVDACNNGK RKVGDGEEEG  120
RGSQGGDDDG DVVAVHGGVG CGGNRACLFA VRERERRRRM NDMFAGIRRL VPNLPEKSSR  180
VEIIDGAIAY IKMLQGEEVR MEAQKQELQR ERDRLAMEYW CID