PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G20470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 719aa MW: 76003.8 Da PI: 10.131

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G20470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	222	266	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W+ eEd l +v+++G g+W I ++ Rt q++ rw OGLUM02G20470.1 222 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 266 68******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MKKEFPGQAP TSRLHSEMDA AAAGGGGAAK RKRSFSEDDA YLILHRYQPA TILTMLQEMG 60 KQVGAGKGID WRALVRRTST GITSAREYQM LWRHLAYGHE FVESVEPASL PLDDGSDLEC 120 EIEIVPAPGN EALAEATSFA KTIITGSSRE QTSGQRVNSE AAALNTPNEK IVRVPSDKQL 180 VPGHRLTNGT GPVSSSKQPS HTGSSPDPLD PNGHPKKKKK PKPWSREEDM ELGAGVQKHG 240 EGNWMEILHK YKFDSSRTHL QLQQRWALIC KRQGSTKPAT PKIPNLMSEE LKAAQKAFSL 300 AIGTTRSSTL RPGGVPHHNP MVTTTTPEVK SVTAPSPLPV PVHVVPVPVP VQPVQVQLPP 360 PQLHQAPAQS APPPPKVSNA SNKSRNNSKK QVAQSIPVNG PLSIQEAALA AGGRIAEPSV 420 ATNFLKAAQS TKAVHIRSRG TGSSKSSTGS KTPTVAGEPG TQLGSDQHLE LQSTGGPSQV 480 LTAHATEQVH NVSEVAGVNP LGQSTGVHLS ETKKALNTTP VSGSSDKMEI DDNSNYFAVT 540 MEDLFPEDVK QEDVQDPKIE EAIDPKDADM LEFDRFVAQG CLNKDNVDKS KAAKIAPEAQ 600 SVIGSQKKQL KTLPTVGKSN PVFAGPPATA KKTKAPVPQG GMSSGIVGVL NRSLGGKAPA 660 PATTGTQSTV QKQQSMSSKG NLLVPKNVAP GTVTPANNRA NTAVNGASKV NPPASQKPA

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MKKEFPGQAP TSRLHSEMDA AAAGGGGAAK RKRSFSEDDA YLILHRYQPA TILTMLQEMG  60
KQVGAGKGID WRALVRRTST GITSAREYQM LWRHLAYGHE FVESVEPASL PLDDGSDLEC  120
EIEIVPAPGN EALAEATSFA KTIITGSSRE QTSGQRVNSE AAALNTPNEK IVRVPSDKQL  180
VPGHRLTNGT GPVSSSKQPS HTGSSPDPLD PNGHPKKKKK PKPWSREEDM ELGAGVQKHG  240
EGNWMEILHK YKFDSSRTHL QLQQRWALIC KRQGSTKPAT PKIPNLMSEE LKAAQKAFSL  300
AIGTTRSSTL RPGGVPHHNP MVTTTTPEVK SVTAPSPLPV PVHVVPVPVP VQPVQVQLPP  360
PQLHQAPAQS APPPPKVSNA SNKSRNNSKK QVAQSIPVNG PLSIQEAALA AGGRIAEPSV  420
ATNFLKAAQS TKAVHIRSRG TGSSKSSTGS KTPTVAGEPG TQLGSDQHLE LQSTGGPSQV  480
LTAHATEQVH NVSEVAGVNP LGQSTGVHLS ETKKALNTTP VSGSSDKMEI DDNSNYFAVT  540
MEDLFPEDVK QEDVQDPKIE EAIDPKDADM LEFDRFVAQG CLNKDNVDKS KAAKIAPEAQ  600
SVIGSQKKQL KTLPTVGKSN PVFAGPPATA KKTKAPVPQG GMSSGIVGVL NRSLGGKAPA  660
PATTGTQSTV QKQQSMSSKG NLLVPKNVAP GTVTPANNRA NTAVNGASKV NPPASQKPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	221	PKKKKKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-39	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G20470.1