PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G20510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 339aa MW: 38501.1 Da PI: 7.9463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G20510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	66	88	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H OGLUM02G20510.1 66 CSyeGCGKTFVDAGALRKHAHVH 88 77779**************9887 PP
2	zf-C2H2	15.5	4.9e-05	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+k F ++s LkrH H OGLUM02G20510.1 93 YVCHyaGCDKKFLDSSKLKRHFLIH 117 9********************8877 PP
3	zf-C2H2	21.9	4.6e-07	123	147	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nLk H++tH OGLUM02G20510.1 123 FVCPheGCGKAFSLDFNLKAHMKTH 147 89**********************9 PP
4	zf-C2H2	13.4	0.00022	153	178	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C ++F++ s L+ Hi+ H OGLUM02G20510.1 153 HVCKypECARRFTQESKLRAHIKQqH 178 789999****************9877 PP
5	zf-C2H2	12.1	0.0006	217	242	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H OGLUM02G20510.1 217 YVCPydGCAKAYIHEYKLNLHLKKeH 242 99*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MMQTAGRRRH RWVKEWVPQD LVVAGGPCAL YKWVREDRLL ALKSRDKEQE AELAKPEPTT 60 EVLFLCSYEG CGKTFVDAGA LRKHAHVHGE RQYVCHYAGC DKKFLDSSKL KRHFLIHTGE 120 KNFVCPHEGC GKAFSLDFNL KAHMKTHSAD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK 180 NPGGSATNRS GLADHSHNSH TPKPSAAPPT PSADRPYVCP YDGCAKAYIH EYKLNLHLKK 240 EHPNHYQDAG AQAASSKMSK RRSKPALTAK MPLPKVPKRR GYTEPYQPPV SVVEEHQWPR 300 NVLYEDDSEE TEEEGDNVGD GARYRAASSD DDEETEDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	280	PKVPKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	4e-99	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G20510.1