PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G20740.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 230aa MW: 25778.1 Da PI: 6.9424

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G20740.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.9	2.1e-32	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGf+F P+deelvv++L++kv+ +++ ++i+++ ++++Pw+L+ k+ + ++wyfF++ + +r+ ++g W+ g d++v s OGLUM02G20740.1 7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGHWSPIGVDETVRS 91 79***********************999.89**********966667789**9855........577789*********9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vglkktL f g+ ++g +t+W+mhey+l OGLUM02G20740.1 92 -GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124 .99***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPHRYNPW ELNGKALQAG 60 NQWYFFCHLT QSRTSSNGHW SPIGVDETVR SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH 120 EYHLLDGDCV AGGSSNLTSS SSNRRSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG 180 TELSCLDEVF LSLDDYDEKE KRKVGGAYAI IWPSMLSMEI MHACVEIALR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-59	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G20740.1