PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20980.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 184aa    MW: 19555.8 Da    PI: 5.0431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20980.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-192373155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae+Aa a++ a+++l+g
  OGLUM02G20980.1 23 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 73
                     68*****998.**********8...325*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MEQQPQQQQA AAPAMAAGGG GGPQYRGVRR RKWGKWVSEI RQPGTKVRIW LGSFDSAEMA  60
AVAHDVAALR LRGRDGAQLN FPGSVGWLPQ PATTDPVDIR AAAAEAAERV RREPALVSAA  120
ASAAPRRLEL GGGDGEFDEM ESPRLWAEMA EAMLLDPPKW GPDGSDGADG SSQSWAHGSL  180
WDGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-20ERF family protein