PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G21200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 531aa MW: 55777.6 Da PI: 6.2379

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G21200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	293	338	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+el+P++ K +Ka++L + ++Y+k Lq OGLUM02G21200.1 293 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 338 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS 60 TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS 120 SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG 180 DLLQEANVSK YHHHQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH 240 RQSAEACGSK NGGAAPFVNL SEVLPKGNGS SSAGNGAPKP RVRARRGQAT DPHSIAERLR 300 REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT 360 ETQTEVNQKN QFTPHSNLYT ALLMQSGQRT GAVNPVKHNA LKDLLKLLMQ SPGFLLSPRS 420 SSGERQAGAG AVTGGLPGDQ PELLDGGAMF EQEVVKLMED NMTTAMQYLQ SKGLCLMPVA 480 LASAISAQKG TSSAAVRPEK KNGGDEEDVK GEFDAPRRPP VGRPKEMRSR V

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHHQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH  240
RQSAEACGSK NGGAAPFVNL SEVLPKGNGS SSAGNGAPKP RVRARRGQAT DPHSIAERLR  300
REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT  360
ETQTEVNQKN QFTPHSNLYT ALLMQSGQRT GAVNPVKHNA LKDLLKLLMQ SPGFLLSPRS  420
SSGERQAGAG AVTGGLPGDQ PELLDGGAMF EQEVVKLMED NMTTAMQYLQ SKGLCLMPVA  480
LASAISAQKG TSSAAVRPEK KNGGDEEDVK GEFDAPRRPP VGRPKEMRSR V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-46	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G21200.1