PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G21270.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 321aa    MW: 34607.3 Da    PI: 6.1845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G21270.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18124178256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  OGLUM02G21270.3 124 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 178
                      788899***********************************************98 PP
2HD-ZIP_I/II126.41.3e-40124215192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l+
  OGLUM02G21270.3 124 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALR 215
                      69**************************************************************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGDEEDLELV LGVRATRRDE QDDQTTCTQS SEEAMEGEED ETRPHGEAPV ESLSFPLFVS  60
SAETGSANSE MCTRGFDVNT RPADGGAEAG RPSSPSSMQE ASTRQQVADQ EAADDEDNGG  120
GGARKKLRLS KEQSSFLEDS FKEHSTLTPK QKSDLANRLN LRPRQVEVWF QNRRARTKLK  180
QTEVDCEHLK RCCERLTREN RRLQREVAEL RGALRTTTSS YPPLYGLHHL PAAAGTVFRV  240
CPSCEHSKVV AAAASESFSP RVFACGGAPA AITAAAAVPS PGAGSPPSSS AALFGARRPH  300
FGPFAAAVIP PVLRRQPSAT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-53HD-ZIP family protein