PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G22050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26317.9 Da    PI: 9.4582
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G22050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.7e-281059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  OGLUM02G22050.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59
                     8***********************************************96 PP
2K-box65.71.6e-2272165498
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++++++ a+ +s  +  +kL+  + +L r+   l GedL+ L++keLq+Le+qLe sl+++R+kK+++l+++i+el +k   +++en++L kk
  OGLUM02G22050.1  72 SKDEQQAVANPNSELKGGSKLETTTAQLARK-SSLTGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKK 164
                      55555666666666677789*********99.9************************************************************9 PP

            K-box  98 l 98 
                      +
  OGLUM02G22050.1 165 I 165
                      8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST  60
SMKSVIDRYG KSKDEQQAVA NPNSELKGGS KLETTTAQLA RKSSLTGEDL SGLNVKELQS  120
LENQLEISLR SVRTKKDHVL IDEIHELNRK GSLVHQENME LYKKISLIHQ ENAELYKKIY  180
ETEGPSEVNR DSPTPYNFAV IEKTNVPVQL GLSTLPQHSD AEQSTAPKLG LQLNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-83MIKC_MADS family protein