PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G25270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 685aa MW: 74044.6 Da PI: 6.9742

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G25270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.7	2.2e-23	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + OGLUM02G25270.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 209 89***************************96555555..8********************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ OGLUM02G25270.1 210 DGGDLHVGIRRA 221 88999***97 PP
2	Auxin_resp	118.2	6.8e-39	271	354	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+ OGLUM02G25270.1 271 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 354 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS 60 AARVPALVPC RVASVRYMAD PDTDEVFARI HLVPLRAADD GDVEEDGAAA GEEHEKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP 180 RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW 240 DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA 300 VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP 360 DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA 420 HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV 480 GPTPIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS 540 PAATGNSSLN WNTEKGASEG SGSGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG 600 QCKVFIESDT VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE 660 PFSEFIKLAR RLTILTDAGS DNLGS

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS  60
AARVPALVPC RVASVRYMAD PDTDEVFARI HLVPLRAADD GDVEEDGAAA GEEHEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GAEEASLPGW  240
DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA  300
VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP  360
DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA  420
HGHHHYHHNH PSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV  480
GPTPIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGTTS  540
PAATGNSSLN WNTEKGASEG SGSGSGSGVI QNSPTDNTSS ERLQWFRENS TVSELGLEPG  600
QCKVFIESDT VGRNLDLSSL ASFEQLYGRL SEMFCIDSAE LRSRVLYRGA TGEVRHAGDE  660
PFSEFIKLAR RLTILTDAGS DNLGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G25270.1