PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G25710.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 210aa    MW: 21733.5 Da    PI: 10.8106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G25710.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43.1e-35541478109
              TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskk 99 
                       +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +++ s ss+          +++  +k+
  OGLUM02G25710.1  54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVsSSAPSTSSH----------QHTlLGKR 137
                      5899999***************************************************999996662111122222..........22213333 PP

              TCP 100 sqksaasaln 109
                      +++++a+a +
  OGLUM02G25710.1 138 QRQESAAADA 147
                      3333332222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK  60
VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS  120
SSAPSTSSHQ HTLLGKRQRQ ESAAADAVSV AGAASAFWAA LPAPGRPDAW GFSPLDAQPT  180
YVPMAQAHHH HLNLLAALSG AARRAEEESR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-28TCP family protein