PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G26080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 83aa MW: 9567.05 Da PI: 12.2635

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G26080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.3	2e-28	34	83	3	52
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLl 52 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG++++++t++WLl OGLUM02G26080.1 34 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSNGETVQWLL 83 6999*********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence
MRAHAARERI RYQQQQMQVA AAVTGERRMQ GLGPKRSSNK DRHTKVDGRG RRIRMPALCA 60 ARIFQLTREL GHKSNGETVQ WLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-30	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G26080.1