PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G26100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 319aa    MW: 34363.7 Da    PI: 5.3456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G26100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ + + g+ R +k+c++rw +yl
  OGLUM02G26100.1 15 KGLWSPEEDQKLRDYILRHGHGCWSALPTKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.52.8e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  OGLUM02G26100.1  69 GVFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      789******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGCKSCEKPR PNYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPTKAGLQRN GKSCRLRWIN  60
YLRPGLKHGV FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVESG  120
GGKTSQGPPT TPASAASSPA DSDDSHSLQQ KPHEPANSDS SEPAHESSSA SADSSCLTVT  180
TDHPPVSRPH AAVTPKVMFA DWLDMEYICG QVAAAPGLDA AGFAVVGGAA GDQQQQQQQV  240
MSQDGSVHQA DGPSCGVDDS SLQQQQQEGF GGNGGCWDFQ EQFDSIDQMQ ASGGGGGGGF  300
CDLLSMSDFD LWAELERTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-57MYB family protein