PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G26410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 608aa MW: 65655.8 Da PI: 4.6643

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G26410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.3	2.4e-29	68	152	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea OGLUM02G26410.1 68 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 152 8*******************************************************************866665..*****85 PP
2	trihelix	108	6.1e-34	375	460	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a OGLUM02G26410.1 375 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 460 8******************************************************************97.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV NSNDDDMMMV DDVVVAGGVG 60 GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE LSRRLAELGY QRSGKKCKEK 120 FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP PPQQRQGMPV EDPQPLAMAR 180 MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG REGLGDDGDG DGEGGSSTRK 240 LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA WRRKEVARIN REREQLSKER 300 AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA AAGLQLVPVP APRAKAEDAW 360 AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP KGPLWEEIAA GMQRIGYNRS 420 AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA IYRKKHFAGR GGGGGGVTIA 480 ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL VHNAPYKKVE GSEGEPNVTA 540 AAEETDSDEM GGEYTDDGDD GDKMQYKIEF QKPTAGGGGD GNDAPVPATT AAATSSAPTS 600 NTSFLAVQ

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV NSNDDDMMMV DDVVVAGGVG  60
GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE LSRRLAELGY QRSGKKCKEK  120
FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP PPQQRQGMPV EDPQPLAMAR  180
MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG REGLGDDGDG DGEGGSSTRK  240
LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA WRRKEVARIN REREQLSKER  300
AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA AAGLQLVPVP APRAKAEDAW  360
AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP KGPLWEEIAA GMQRIGYNRS  420
AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA IYRKKHFAGR GGGGGGVTIA  480
ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL VHNAPYKKVE GSEGEPNVTA  540
AAEETDSDEM GGEYTDDGDD GDKMQYKIEF QKPTAGGGGD GNDAPVPATT AAATSSAPTS  600
NTSFLAVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-46	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G26410.1