PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G27070.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 225aa    MW: 23220.6 Da    PI: 5.0812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G27070.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184998255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  OGLUM02G27070.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98
                     69****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDDSSFGYEP TTSSSGGEAP ASPPSTASSS SDGAGGKKKR PRKDGHHPTY RGVRMRSWGK  60
WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPDLAH ELPRPATAAP  120
KDVQAAAALA AAADFPASSA NAGASNNPDG SDDASAGSAS PPPPPDAADD ALFDLPDLLL  180
DLRYGPPSSG LSCASSWEDE VGLISGAGAA AAGVFRLEEP LLWEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-39ERF family protein