PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G27190.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 338aa MW: 35153.1 Da PI: 5.4072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G27190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C ++F ++ L H+r+H OGLUM02G27190.1 6 CKLCYRRFASPRALAGHMRSH 26 ********************9 PP
2	zf-C2H2	11.4	0.00097	195	217	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H OGLUM02G27190.1 195 FQCPACKKVFRSYQALGGHRASH 217 89**********99999998887 PP
3	zf-C2H2	10.9	0.0014	259	281	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H OGLUM02G27190.1 259 HECPYCYRVFASGQALGGHKKSH 281 79************999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA 60 DEEEEEEEEE EEDVGFKKPL SIYALRENPK RSLRVSEYAF SDRESEAEST PTPAAKGLRG 120 GGGDGEPMSS LSYAGTPEEE VALALMMLSR DTWPSVERGG GGGEYSDDGS DDGYALPPPS 180 PAPAPAPVPE KRTRFQCPAC KKVFRSYQAL GGHRASHVRG GRGGCCAPPV APPPQPHPQP 240 PLPEHDAGEE DMDGKAPPHE CPYCYRVFAS GQALGGHKKS HVCSAAAAAA HAQTPGGGAP 300 PPQPKILGMI DLNFAPPVDE VELSAVSDPH FPSNPPGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G27190.1