PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G28430.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 209aa MW: 22052.1 Da PI: 9.8369

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G28430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.2	1.8e-25	133	177	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +++pgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ OGLUM02G28430.1 133 EPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177 699***************************************997 PP
2	QLQ	52.3	1.7e-18	68	103	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 a+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k OGLUM02G28430.1 68 ALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103 79*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MGEEKEADSP QPPSKLPRLS GADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDVEASA 60 AAAHKATALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVASSSF GPHRFPSLMG 120 LGNLCFDYRS SMEPDPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEASAA 180 ATPANNGGGG GIVFSPTSVL LAHGAARAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	8e-37	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G28430.1