PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G28780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 491aa MW: 51765.6 Da PI: 6.5143

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G28780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE+ l+++a +++G W++I +++g ++t+ q++s+ qk+ OGLUM02G28780.1 61 REKWTDEEHRLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MEMACLQGNA MATDENGADD RAGGESTVDH LRSHMNYGDM DLSGEEHVPK ARKPYTITKQ 60 REKWTDEEHR LFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGSNTGS 120 GGASAAAAAA AIQIPPPRPK RKPAHPYPRK VDGAAKKHVP ALRQLEKPPL WMQSLSEQEE 180 GSPTSVLTAA QIGTEALGGG FSNNSSGSGS LAPSAAGTDE HVDGGGSPAS SVDREDGCLS 240 PSIPTAELAM QAPNTKMSIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLNGSNIATS 300 GSVERATRNI LVPSFAAAPE GSSSNPWPIS MQQFLYFLPR SDGFAAQPVM PWFSYNGSLP 360 CALFYPAAAA AANQQCHRDS EGVEFRVSQR EGSLTGSNTA SSVVLGSSAA VPAAAAAAQN 420 SDVAESRGQG NSREAAASPR LTKCESSASV TLLQRGFMPY KRCAAESELL RSEAAGGEEA 480 VADGELTRLC L

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MEMACLQGNA MATDENGADD RAGGESTVDH LRSHMNYGDM DLSGEEHVPK ARKPYTITKQ  60
REKWTDEEHR LFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGSNTGS  120
GGASAAAAAA AIQIPPPRPK RKPAHPYPRK VDGAAKKHVP ALRQLEKPPL WMQSLSEQEE  180
GSPTSVLTAA QIGTEALGGG FSNNSSGSGS LAPSAAGTDE HVDGGGSPAS SVDREDGCLS  240
PSIPTAELAM QAPNTKMSIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLNGSNIATS  300
GSVERATRNI LVPSFAAAPE GSSSNPWPIS MQQFLYFLPR SDGFAAQPVM PWFSYNGSLP  360
CALFYPAAAA AANQQCHRDS EGVEFRVSQR EGSLTGSNTA SSVVLGSSAA VPAAAAAAQN  420
SDVAESRGQG NSREAAASPR LTKCESSASV TLLQRGFMPY KRCAAESELL RSEAAGGEEA  480
VADGELTRLC L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-36	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G28780.1