PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G29200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 419aa MW: 44405.1 Da PI: 6.7746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G29200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.8e-11	88	182	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................................TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.........................................kapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++N+ ++ Lr+l+P+++ +a + a+i+ A+e++k+ OGLUM02G29200.1 88 QRMTHIAVERNRRRQMNEYLAVLRSLMPEPYvqrqtdiascqskkamseqparrtamreclaerdspamaplSAITHGGDQASIVGGAIEFVKE 181 79***************************76688888887777777777777777777777777777777644333336667777777777666 PP H CS HLH 54 L 54 L OGLUM02G29200.1 182 L 182 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA 60 AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ 120 RQTDIASCQS KKAMSEQPAR RTAMRECLAE RDSPAMAPLS AITHGGDQAS IVGGAIEFVK 180 ELEQQLQSLE AQKRTLLPHH KARCDDATPM HNASGSNVGA GGCMEPTTTT SNCSSSVTED 240 APSADAPPFA QFFAYPQYVW CHSPRDSTTT TTAASASASA SASSSSPATV AAALQSEHRS 300 GLADIEVSLV ETHASVRVMS PRRPGQLLKM IAGLQALRLT VLHLNVTTLD SLVLYTLSVK 360 VEEGCSLTTV DDIAAAVHHV LCIVDAEAAA SEHLLAAGQL ATTATAAAVA KRKLATYMY

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA  60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ  120
RQTDIASCQS KKAMSEQPAR RTAMRECLAE RDSPAMAPLS AITHGGDQAS IVGGAIEFVK  180
ELEQQLQSLE AQKRTLLPHH KARCDDATPM HNASGSNVGA GGCMEPTTTT SNCSSSVTED  240
APSADAPPFA QFFAYPQYVW CHSPRDSTTT TTAASASASA SASSSSPATV AAALQSEHRS  300
GLADIEVSLV ETHASVRVMS PRRPGQLLKM IAGLQALRLT VLHLNVTTLD SLVLYTLSVK  360
VEEGCSLTTV DDIAAAVHHV LCIVDAEAAA SEHLLAAGQL ATTATAAAVA KRKLATYMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	75	RKKRRRR
2	70	75	KKRRRR
3	89	100	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-49	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G29200.1