PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G29380.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 344aa MW: 36799.9 Da PI: 4.4248

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G29380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl OGLUM02G29380.1 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	49.7	8.4e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l OGLUM02G29380.1 69 RGNFTADEEDTIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTADEEDTI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSQ 120 REKPGDTKKK GKAADASDDA DAHSPSSSAS SSTTTAANNN NSGDTAGEQC GTSKEPENVD 180 VSFFEQDIDI SDMLVDAPTE APLVAAPMPP SPCSSSSLTT TTCVGAVSDE LLDLPEIDIE 240 PDIWSIIDGY GGDEPVVSGA DGDATVPCTA SPGEEGAEWW VENLEKELGL WGPMDESLAH 300 PDPPGQVCYP GPLTETEGDP VSTYFQSGPT ASPLQEIASP AVLS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTADEEDTI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSQ  120
REKPGDTKKK GKAADASDDA DAHSPSSSAS SSTTTAANNN NSGDTAGEQC GTSKEPENVD  180
VSFFEQDIDI SDMLVDAPTE APLVAAPMPP SPCSSSSLTT TTCVGAVSDE LLDLPEIDIE  240
PDIWSIIDGY GGDEPVVSGA DGDATVPCTA SPGEEGAEWW VENLEKELGL WGPMDESLAH  300
PDPPGQVCYP GPLTETEGDP VSTYFQSGPT ASPLQEIASP AVLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	2e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G29380.1