PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G30650.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 119aa MW: 13246.2 Da PI: 8.2892

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G30650.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.7	1.4e-12	16	56	60	100
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+++ e OGLUM02G30650.1 16 RLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAQGE 56 69**********************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence
MCSGSPCASC KLLRRRLVYE ANDRMRDPVY GCVGAISFMQ NQVSQLQMQL AVAQGEILCI 60 QMQHRDGNEN EKNLRDLGCT FSTSCGPSRS VAGQAERFGG LQFIMGRNHF WASIWPIGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-25	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G30650.1