PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G31440.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 407aa MW: 44090.5 Da PI: 8.2036

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G31440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21	7.1e-07	71	112	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ OGLUM02G31440.1 71 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 112 7*****************************657888889876 PP
2	zf-B_box	22.2	3e-07	114	156	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ +++ C + ++ lC++C ++H g H++++ OGLUM02G31440.1 114 LCDRCVGQPAAVRCLEENTSLCQNCDWNGH-GaassaagHKRQT 156 7*****************************.5588889998876 PP
3	CCT	64.5	3.2e-22	350	393	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ OGLUM02G31440.1 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRILLNS TVEQKARKVA VLVALSASGS 60 APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG 120 QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP 180 TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST ALMSDLPTGD KFKPLIGSSS 240 GDGMNLLPLN SDQPAEPVST TPKQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA 300 ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MLSNSSGSFH GLYQYTYISP TLTKEWKQTH HYPGRILLNS TVEQKARKVA VLVALSASGS  60
APVLYRTMDA LCDFCGEQRS MVYCRSDAAS LCLSCDRNVH SANALSRRHT RTLLCDRCVG  120
QPAAVRCLEE NTSLCQNCDW NGHGAASSAA GHKRQTINCY SGCPSSAELS RIWSFSMDIP  180
TVAAEPNCEE GINMMSINDN DVNNHCGAPE DGRLLDIAST ALMSDLPTGD KFKPLIGSSS  240
GDGMNLLPLN SDQPAEPVST TPKQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA  300
ISNISLSFSG LTGESSAGDF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	364	KKKRR
2	360	365	KKKRRK
3	360	386	KKKRRKFDKKIRYASRKARADVRKRVK
4	361	387	KKKRRKFDKKIRYASRKARADVRKRVK
5	361	365	KKRRK
6	362	388	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-79	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G31440.1